PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G04870.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 781aa    MW: 85594.9 Da    PI: 7.2393
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G04870.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.75.9e-20119231199
                      EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.......TTHHHHHHHHT--TT-E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvlt.......kGWkeFvkangLkegDf 79 
                      f+k+l+p+dv++++ lvlp     eh         +++   +   ++d++g+++e+ +i++kk++ry+l+       +GW++Fvka++L ++D+
  OGLUM07G04870.1 119 FEKQLSPADVTSNA-LVLPAGA--EHglppldiaAYQT--ARLFDVRDLRGKRFEFVHIWDKKRCRYMLGdlgvndnDGWRGFVKAKRLATRDT 207
                      99***********9.9999874..78577777665554..4579999*********************************************** PP

                      EEEE....E-SSSEE..EEEEE-S CS
               B3  80 vvFk....ldgrsefelvvkvfrk 99 
                      vvF+     dg+ ++el+v+v+r+
  OGLUM07G04870.1 208 VVFMrrggGDGDGDGELLVGVRRA 231
                      ****7765566799999**99997 PP
2B380.12.3e-25489594199
                      EEEE-..-HHHHT.....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3   1 ffkvltpsdvlks.....grlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                      f+k+l+psdv ++     +++v+pk+ a+eh ++ + + +l+++d++g +We+ +++     +++s++++l++GW+ Fvka++L++gD+v+F++
  OGLUM07G04870.1 489 FDKKLSPSDVAANgggsgALFVIPKPSAAEHVLP-RIP-DLRVTDLQGGRWEFGHTWsdadtDRRSSSHTLAAGWSAFVKAKRLCVGDTVIFMR 580
                      89***********99998899**********776.455.9********************99999999*************************4 PP

                      -SSSEE..EEEEE-S CS
               B3  85 dgrsefelvvkvfrk 99 
                       +r ++e++v+v+rk
  OGLUM07G04870.1 581 -RRPGGEPLVGVRRK 594
                      .44**********98 PP
3Auxin_resp28.56.4e-11254330276
       Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvek.alk..vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpn 76 
                      + a++  ++Fev+Y+Pr +t eFvv+++++   +++   ++ +G+ + ++++    ++ ++sGtv+   +l p r  +
  OGLUM07G04870.1 254 WLAMQGVTPFEVTYYPREGTFEFVVSRDEYIGfSFSpfYPFVPGTTVHLRMNPLQIAQ-SISGTVRTFDHLRPWRMLE 330
                      66778889********************9875333344999***********998875.569******9999966555 PP
4Auxin_resp57.46.5e-20611687183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ +as++++F+v+Y+P+++t+eFvv++e+v  +   ++++G+R+++ ++ +d ++r++   +Gtv   +d+d+    +S+Wr+L+
  OGLUM07G04870.1 611 AWLDASSAQPFRVTYCPWQGTAEFVVRREEVDGSP--PLAPGTRVRLLMNPDDTRRRSQppvYGTV---RDVDS----RSEWRMLE 687
                      67889*****************************9..*********************95555555...55555....9****996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    
MAQPPDAAAA AVPPPVVIDR DVWHACAVPY SGVLPGVGTL VYYIPHGHIE QCAEDPALLL  60
SRLPDPIHPV PCTVADLVLD VDAESGEAYA TISLLPGSHD DTTARRQVPA HGEPGFRFFE  120
KQLSPADVTS NALVLPAGAE HGLPPLDIAA YQTARLFDVR DLRGKRFEFV HIWDKKRCRY  180
MLGDLGVNDN DGWRGFVKAK RLATRDTVVF MRRGGGDGDG DGELLVGVRR APRARGGHHP  240
RPGVEDNKVV SEVWLAMQGV TPFEVTYYPR EGTFEFVVSR DEYIGFSFSP FYPFVPGTTV  300
HLRMNPLQIA QSISGTVRTF DHLRPWRMLE VDWDQAASPI SYRIHRQVNS WQVLRQPQPA  360
ATTSAVRIRD AIVATPQVQI MAPPRPPPPT TTTGMVPVID HDIWLACATP YSGRLPVVGS  420
AVYYFPQGHA EQCHTCTTCL IPDNRHRLRC TSDDSYAMIS LFPGDCYVTH RPLPAARDPV  480
GGQREFCFFD KKLSPSDVAA NGGGSGALFV IPKPSAAEHV LPRIPDLRVT DLQGGRWEFG  540
HTWSDADTDR RSSSHTLAAG WSAFVKAKRL CVGDTVIFMR RRPGGEPLVG VRRKPHGGMP  600
VGIPDKHVAD AWLDASSAQP FRVTYCPWQG TAEFVVRREE VDGSPPLAPG TRVRLLMNPD  660
DTRRRSQPPV YGTVRDVDSR SEWRMLEVDW DRDSPLAPTM NRRVNSWQVQ PVQLALPPQG  720
SDEEAAAATT STAHAGDATT SAPSLALQVQ TMASSSSSSA PIIPSRGSAF RIVNPRDGSQ  780
G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.18e-32ARF family protein