PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G28690.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

DBB

Protein Properties

Length: 308aa MW: 31957.7 Da PI: 4.9316

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G28690.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19	2.8e-06	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ + +++ C ++ lC C H+ H++ pl OGLUM06G28690.1 4 QCDVCAAEPAAVLCCADEAALCSACDRRVHRAnrlaskHRRLPL 47 7*****************************76889999988775 PP
2	zf-B_box	26.4	1.4e-08	63	104	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++ C+ + ek+ fC +++ lC+dC + +H+ Ht OGLUM06G28690.1 63 APLCDVCREKRGLVFCVEDRAILCADCDEPIHSAndltakHT 104 579*****************************6577777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
MRVQCDVCAA EPAAVLCCAD EAALCSACDR RVHRANRLAS KHRRLPLVHP SSSSSGDGGA 60 AAAPLCDVCR EKRGLVFCVE DRAILCADCD EPIHSANDLT AKHTRFLLVG AKLSPAALAE 120 QPLPSSDCSS DDDAAAAATE EEYHSSAAST GAAVSAPLDA SSNGAGGGGG VGGSSISDYL 180 TTICPGWRVE DLLPDDDAFN AAAAQAGKEK DERVPFLDAD LFDVVAGRPE KKGGAWAPHV 240 PHLPAWCLDE VPVVVAASAA PAATPVKAKQ GHVRDSHWSD SDAFAVPEFS PPPPPAKRAR 300 PSSQFWCF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	3e-39	DBB family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G28690.1