PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G28430.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 310aa MW: 34455.9 Da PI: 7.5313

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G28430.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.8	8.8e-24	102	198	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHn 86 +fY++YA ++GF vr++ks++s+r++++++r+fvC++eg++ +++++ + k+rr+r r gC a+ +v+k++ +w+vtk++ +H OGLUM06G28430.1 102 EFYCAYADRAGFAVRTDKSRRSRRDDSVIMRRFVCTREGFHPTRHDDlteseaaAGKRRRKRLIIREGCMAMCEVTKKEpPLRWVVTKFVAHHV 195 6****************************************99999999999999999**************99************ PP FAR1 87 Hel 89 H++ OGLUM06G28430.1 196 HPV 198 *97 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MGPPCEAQSL LSLFARFLLL PLERIPFPFR STPTPALLHS RRRELRGVGG MEGHRRGEAD 60 DEEEELGLRL GLASAGASAA AAAAGEPPSV GMEFPTSEAA REFYCAYADR AGFAVRTDKS 120 RRSRRDDSVI MRRFVCTREG FHPTRHDDLT ESEAAAGKRR RKRLIIREGC MAMCEVTKKE 180 PPLRWVVTKF VAHHVHPVSL PLCPRPPPAG ESDGLAGEHA AALDEPTQAA TEPSDEPTGA 240 PAAARWDYVI HKYNLEENTW LQSLYDTRQQ WAWVYQKGSF FPELLKSQRS ERLNNCTEAL 300 NSTKASSTSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	7e-13	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G28430.1