PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G24650.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 463aa    MW: 49499.4 Da    PI: 6.8473
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G24650.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.99.1e-12129185155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  OGLUM06G24650.1 129 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 185
                      57*******************5444.2455536655.779999**************98 PP
2AP247.44.6e-15228279155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  OGLUM06G24650.1 228 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 279
                      57****************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    
MDMDMSSAYP HHWLSFSLSN NYHHGLLEAL STTSAPPLGE EGPAEGAPKM EDFLGGLGGG  60
GGAVAAAPAA APEDQLSCGE LGSIAAGFLR RYPAPENAGG VTIAMATDAA AELADPARRT  120
AETFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA  180
LKYWGPTTTT NFPVANYETE LEEMKSMTRQ EFIASLRRKS SGFSRGASIY RGVTRHHQHG  240
RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMTR YDVDSILNSD  300
LPVGGGAATR ASKFPSDPSL PLPSPAMPPS EKDYWSLLAL HYHQQQQQQQ FPASAFDTYG  360
CSSGVNVDFT MGTSSHSGSN SNSSSSSAIW GTAAGAAMGR QQNGGSSNKQ SNSYSGNNIP  420
YAAAAAMTSG SALYGGSTGS NGTWVASNTS TAPHFYNYLF GME
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-117AP2 family protein