PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM06G17270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 157aa MW: 17729.4 Da PI: 11.2713 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.4 | 2.8e-21 | 19 | 62 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 rie+k +rqvtf+kRr+g++ KA+ELS+L+++ vav++fs+ ++ OGLUM06G17270.1 19 RIEDKPRRQVTFTKRRAGLFRKASELSILTGTAVAVLVFSEANR 62 8***************************************9886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence |
MVHPRGRPSK GRQAIEIRRI EDKPRRQVTF TKRRAGLFRK ASELSILTGT AVAVLVFSEA 60 NRPYALADPS SSLVDDAVLR SRCYAPAPGV HDCEPEALRR AADEAKVEVA RLRDVAGRRF 120 WWWWEATNVE ALGEAELPEF TRVLGRVRAA VVRRRAL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-17 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM06G17270.1 |