PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G10200.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 555aa MW: 59278.6 Da PI: 6.7438

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G10200.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.5	5.7e-33	220	276	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers +++++ei+Y+g+Hnh OGLUM06G10200.1 220 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSL-EGQITEIVYKGTHNHA 276 8**************************************.*************7 PP
2	WRKY	105.9	2.1e-33	384	442	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d ++v++tYeg+Hnh+ OGLUM06G10200.1 384 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERASHDLRAVITTYEGKHNHD 442 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MTTSSSGSVE TSANSRPGTF SFASASFTDL LGGNAGAGGG GVSRYKAMTP PSLPLSPPPV 60 SPSSFFNSPI GMNQADFLGS PVLLTSSIFP SPTTGAFESQ HFDWRPEVAA AQSADQGSKD 120 EQRNSYSDFS FQTAPASEEA ARTTTFQPPV PPAPLGDEAY RSQQQQQPWG YQQQPAGMDA 180 GANAASFGAA PFQATSSEMA PQVQGGGGYS QPQSQRRSSD DGYNWRKYGQ KQVKGSENPR 240 SYYKCTFPNC PTKKKVERSL EGQITEIVYK GTHNHAKPQN TRRNSGSSAA QVLQSGGDMS 300 EHSFGGMSGT AATPENSSAS FGDDEIGVGS PRAGNGGGDE FDDDEPDSKR WRKDGDGEGI 360 SMAGNRTVRE PRVVVQTMSD IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TTAGCPVRKH 420 VERASHDLRA VITTYEGKHN HDVPAARGSA ALYRPAPPAA AATSSHPYLP NQPPPMSYQP 480 TGPQPYALRP DGFGGQGPFG GVVGGSSFGA FSGFDDARGS YMSQHQQQQR QNDAMHASRA 540 KEEPGDDMFF QNSLY

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MTTSSSGSVE TSANSRPGTF SFASASFTDL LGGNAGAGGG GVSRYKAMTP PSLPLSPPPV  60
SPSSFFNSPI GMNQADFLGS PVLLTSSIFP SPTTGAFESQ HFDWRPEVAA AQSADQGSKD  120
EQRNSYSDFS FQTAPASEEA ARTTTFQPPV PPAPLGDEAY RSQQQQQPWG YQQQPAGMDA  180
GANAASFGAA PFQATSSEMA PQVQGGGGYS QPQSQRRSSD DGYNWRKYGQ KQVKGSENPR  240
SYYKCTFPNC PTKKKVERSL EGQITEIVYK GTHNHAKPQN TRRNSGSSAA QVLQSGGDMS  300
EHSFGGMSGT AATPENSSAS FGDDEIGVGS PRAGNGGGDE FDDDEPDSKR WRKDGDGEGI  360
SMAGNRTVRE PRVVVQTMSD IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TTAGCPVRKH  420
VERASHDLRA VITTYEGKHN HDVPAARGSA ALYRPAPPAA AATSSHPYLP NQPPPMSYQP  480
TGPQPYALRP DGFGGQGPFG GVVGGSSFGA FSGFDDARGS YMSQHQQQQR QNDAMHASRA  540
KEEPGDDMFF QNSLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	3e-96	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G10200.1