PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G08590.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 399aa MW: 40123.2 Da PI: 9.1589

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G08590.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	133.7	1.7e-41	67	246	2	137
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ OGLUM06G08590.1 67 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSIPshlrla 160 789****************************************************************9999899999999988888999999 PP TCP 89 .................................kaaksaakskksqksaasalnlakesr..akarar.are.rtrekmriknkln 137 +a +s+ + s +s + l+++ s + a a+ +r+ r++++m+++++ + OGLUM06G08590.1 161 glagprfgggaraadawdrvvglgfggaadapsSATSSSSPLLLSFHSGSVGLDVSPPSAstSPAAADlSRKrRWEQEMQQQQQYQ 246 999999999999************999999644444447777777777778777755422333333566668888888887765 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MDVTEDGGGG RRPNFPLQLL GKKEEQTCST SQSAGAGGGG GGGVVGANGS EAAAQGELQV 60 RTKAAAPPKR TSTKDRHTKV DGRGRRIRMP AICAARVFQL TRELGHKTDG ETIEWLLQQA 120 EPAVIAATGT GTIPANFTSL NISLRSSGSS LSIPSHLRLA GLAGPRFGGG ARAADAWDRV 180 VGLGFGGAAD APSSATSSSS PLLLSFHSGS VGLDVSPPSA STSPAAADLS RKRRWEQEMQ 240 QQQQYQQQMA GYTQSQIPAG TVWMVPSSNA QAAGGGAPPG GGGESIWTFP QSGSGGGGGA 300 ATVYRGVPSG LHFMNFPATP MALLPGGQQL GLAGAGGGGE GHPGILAALN AYRAQAAQPD 360 AGAAAQNAAQ GSSQHRQHQH HGGGGGGDER HESMSASDS

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MDVTEDGGGG RRPNFPLQLL GKKEEQTCST SQSAGAGGGG GGGVVGANGS EAAAQGELQV  60
RTKAAAPPKR TSTKDRHTKV DGRGRRIRMP AICAARVFQL TRELGHKTDG ETIEWLLQQA  120
EPAVIAATGT GTIPANFTSL NISLRSSGSS LSIPSHLRLA GLAGPRFGGG ARAADAWDRV  180
VGLGFGGAAD APSSATSSSS PLLLSFHSGS VGLDVSPPSA STSPAAADLS RKRRWEQEMQ  240
QQQQYQQQMA GYTQSQIPAG TVWMVPSSNA QAAGGGAPPG GGGESIWTFP QSGSGGGGGA  300
ATVYRGVPSG LHFMNFPATP MALLPGGQQL GLAGAGGGGE GHPGILAALN AYRAQAAQPD  360
AGAAAQNAAQ GSSQHRQHQH HGGGGGGDER HESMSASDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	2e-43	TCP family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G08590.1