PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G04110.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 349aa    MW: 37380.4 Da    PI: 4.5226
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G04110.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-18122172256
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                      +++GVr ++ +g++ AeIr+      +++r++lg+f+taeeAa+ +++a+++l+g+
  OGLUM06G04110.1 122 KFRGVRKRP-WGKYGAEIRV----SqQSARVWLGTFDTAEEAARVYDHAALRLRGP 172
                      89*******.**********....3245**************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MIEAVVEKKA RRIVRGRWHV EASNEAAAAA PAVVAAPAPR VVRILYRDHD ATDSSGDDDG  60
EDDAPRRARL LVHEIHVARQ PVAMSPAAAA SSSQRRRVGP MKRRTEAAVD ATAAAEVAPE  120
RKFRGVRKRP WGKYGAEIRV SQQSARVWLG TFDTAEEAAR VYDHAALRLR GPSATTNFPV  180
TPTAPAPSPP PSRDTNAGAA SGYDESSDES QLVGSPVSVL RPMPARATAK KEAKEEDDSA  240
PDILGISAGD GLIFPFTGDV MNFPPPDEDM FGGGISFGEP TPPPMVFDDD CMARLGHVPN  300
DDVDDEHPVT SSYFLDDDLG DLPSWTEVDG FFSDVGGDDL FAAEPFPAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-25ERF family protein