PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G03950.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 392aa MW: 41517.6 Da PI: 6.3003

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G03950.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	89.4	3.1e-28	144	204	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK++ g++fpr+YYrCt++ gCp++k+v+rs+ d v+++tY+g H+++ OGLUM06G03950.1 144 DDGFSWRKYGQKDILGAKFPRGYYRCTYRnaqGCPATKQVQRSDADLAVFDVTYQGAHTCH 204 8*************************98889************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MDGGDIHLLL SILADGEEQA RQLGEPAAAA DDEYHSGGRG EEYYRGVARQ LRGTLARAMG 60 VARAIEAAAF AGGGGGGGAS GSRGTTGDRS DSPRSADESS GRTARDAAVA QQERHHDTIK 120 RRKGLPRWTE KFRVPDASLE ATPDDGFSWR KYGQKDILGA KFPRGYYRCT YRNAQGCPAT 180 KQVQRSDADL AVFDVTYQGA HTCHQKQRRA AAAGDQPPPP PPQADPSVEL LVNFRHGLKV 240 ETNGLAPPPP PPPTTTTNFH DDQHFCFPSM PPFHAGVGPP PPPDDALGGG GCNNFSSPPF 300 VSPAGSAAGE NYFSMEHSYE PRGGGGHFVM SRGDSSELHE VVSAAASSSA VVDPAAAGGG 360 FDYPLYHGEV DPHLPFPPLF GHASMYGQYR DA

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MDGGDIHLLL SILADGEEQA RQLGEPAAAA DDEYHSGGRG EEYYRGVARQ LRGTLARAMG  60
VARAIEAAAF AGGGGGGGAS GSRGTTGDRS DSPRSADESS GRTARDAAVA QQERHHDTIK  120
RRKGLPRWTE KFRVPDASLE ATPDDGFSWR KYGQKDILGA KFPRGYYRCT YRNAQGCPAT  180
KQVQRSDADL AVFDVTYQGA HTCHQKQRRA AAAGDQPPPP PPQADPSVEL LVNFRHGLKV  240
ETNGLAPPPP PPPTTTTNFH DDQHFCFPSM PPFHAGVGPP PPPDDALGGG GCNNFSSPPF  300
VSPAGSAAGE NYFSMEHSYE PRGGGGHFVM SRGDSSELHE VVSAAASSSA VVDPAAAGGG  360
FDYPLYHGEV DPHLPFPPLF GHASMYGQYR DA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23810.1	6e-38	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G03950.1