PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G00470.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TALE

Protein Properties

Length: 517aa MW: 56570.4 Da PI: 7.6077

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G00470.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.6	1e-08	305	342	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++ LA+++gL+ +qV++WF N R + OGLUM06G00470.1 305 FEHflHPYPNDVDKHILARQTGLSRSQVSNWFINARVR 342 554459******************************88 PP
2	BELL	60.4	4.1e-20	170	229	4	72
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +l+++ka++ls++ee++ +++v sFeavag g+a++Yt+lA++a+SrhFrcL+da+++q+ OGLUM06G00470.1 170 DLERRKARILSMVEEIK---------MRAVEVSFEAVAGGGAAQVYTKLAMRAMSRHFRCLRDALVGQV 229 68899999999999996.........89**************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MMAAHHHHHE HHHLLDMSSP PNASGAIISS FDHAAGLLSL HDVAAAADHH HHHLRGGGGG 60 LQLPSPWSQQ QVSLSLYNNA AGAAGSPPSS LVAHQQLAAA QPLMFQLRGS KYLGPVKALL 120 AEFCSLDVEA MDGAKQQRAP NPNPKIGKWD DVEGSGSWGN LSLSSMDLLD LERRKARILS 180 MVEEIKMRAV EVSFEAVAGG GAAQVYTKLA MRAMSRHFRC LRDALVGQVR ALRNAMGESQ 240 RDAAGGVAAA APGATKGDTP RLRVLDQCLR QQRAFQQSGA VDSFPWRPQR GLPERAVAVL 300 RAWLFEHFLH PYPNDVDKHI LARQTGLSRS QVSNWFINAR VRLWKPMIED MYKEETKPES 360 SDGNNKLNPS AAGNKQQHRD DPKKNYTATT AEASLVQQSS YHLHLRSRGN PNSSSLMIPA 420 AASTSIDHHH DSSHQLLGGH SYSSAAGLHH GHGGAVSLTL GLQQQQQPFA ASMMHQHQQQ 480 QQQQQQSFMV EAAEEEEDDV LPYRNLMESQ LLHDFAG

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MMAAHHHHHE HHHLLDMSSP PNASGAIISS FDHAAGLLSL HDVAAAADHH HHHLRGGGGG  60
LQLPSPWSQQ QVSLSLYNNA AGAAGSPPSS LVAHQQLAAA QPLMFQLRGS KYLGPVKALL  120
AEFCSLDVEA MDGAKQQRAP NPNPKIGKWD DVEGSGSWGN LSLSSMDLLD LERRKARILS  180
MVEEIKMRAV EVSFEAVAGG GAAQVYTKLA MRAMSRHFRC LRDALVGQVR ALRNAMGESQ  240
RDAAGGVAAA APGATKGDTP RLRVLDQCLR QQRAFQQSGA VDSFPWRPQR GLPERAVAVL  300
RAWLFEHFLH PYPNDVDKHI LARQTGLSRS QVSNWFINAR VRLWKPMIED MYKEETKPES  360
SDGNNKLNPS AAGNKQQHRD DPKKNYTATT AEASLVQQSS YHLHLRSRGN PNSSSLMIPA  420
AASTSIDHHH DSSHQLLGGH SYSSAAGLHH GHGGAVSLTL GLQQQQQPFA ASMMHQHQQQ  480
QQQQQQSFMV EAAEEEEDDV LPYRNLMESQ LLHDFAG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	2e-85	TALE family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G00470.1