PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G28310.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 500aa    MW: 53053.1 Da    PI: 6.2953
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G28310.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.25e-109784542374
             GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                      v+l+++cA a+++gd ++a   L+  +e+    p+  + + R+ ++f+ ALa+rl+   ++   + pp + +     e+   ++ f+e+ P+lk
  OGLUM05G28310.1  78 VNLMVTCAGAIQAGDYAAAAGSLSDAREIfaKMPTTrTGIGRVLTHFADALAERLFPAFPQ---SAPPPPPP---RGEQRELFRGFYEAGPYLK 165
                      6899************************98644444499*****************94443...33444444...4555567899********* PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      f+hl+aNqaIlea+eg++ vH+iDf ++ G+QWp+L+qaLa Rp+gpp lRiTg+g++++g+++el+ +g rLa+fA+++ vpf f+ ++a++l
  OGLUM05G28310.1 166 FAHLAANQAILEAFEGCNSVHVIDFALTDGIQWPSLIQALAVRPGGPPFLRITGIGPHAAGNRDELRDVGLRLAEFARSCSVPFAFRGIAADQL 259
                      *********************************************************9999********************************* PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                      + l++++++v pgEa+a+n+vlqlhrll ++ + +      ++d vL+ v s++P+v++vveqeadhn++s+lerf+++l yy+++fdslea  
  OGLUM05G28310.1 260 DGLRPWMFQVAPGEAVAINSVLQLHRLLVDQDAAAAasfpaPIDGVLDWVASMNPRVFTVVEQEADHNKSSLLERFTNSLFYYASMFDSLEAIS 353
                      ***************************9544333333455599***********************************************9874 PP

             GRAS 276 pres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                       +     + + + +++l+ ei ++v+ eg++r+erhe++ +W erl++ G++++pl+ +   qa + lr++++ g+ v+e+ g l+l+W++++L
  OGLUM05G28310.1 354 RHGGgdGAGNPLAEAYLQGEIADIVSREGSSRVERHEQMPRWVERLRRGGMTQLPLGATGLWQAVMQLREFSGAGFGVQENGGFLTLTWHSQRL 447
                      33334599999*********************************************************************************** PP

             GRAS 368 vsvSaWr 374
                      +s+SaWr
  OGLUM05G28310.1 448 YSASAWR 454
                      ******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    
MAQFGGFGGW STMDVAAAAA AALGNVSGAV YHADPAAAVY ASLVPGMAVV PGRAPPSAVQ  60
IEAARRWKEL EKMALRSVNL MVTCAGAIQA GDYAAAAGSL SDAREIFAKM PTTRTGIGRV  120
LTHFADALAE RLFPAFPQSA PPPPPPRGEQ RELFRGFYEA GPYLKFAHLA ANQAILEAFE  180
GCNSVHVIDF ALTDGIQWPS LIQALAVRPG GPPFLRITGI GPHAAGNRDE LRDVGLRLAE  240
FARSCSVPFA FRGIAADQLD GLRPWMFQVA PGEAVAINSV LQLHRLLVDQ DAAAAASFPA  300
PIDGVLDWVA SMNPRVFTVV EQEADHNKSS LLERFTNSLF YYASMFDSLE AISRHGGGDG  360
AGNPLAEAYL QGEIADIVSR EGSSRVERHE QMPRWVERLR RGGMTQLPLG ATGLWQAVMQ  420
LREFSGAGFG VQENGGFLTL TWHSQRLYSA SAWRATAGKK MTMMASGAAD AMEESQNSNT  480
NGGGGGSSGG GHGALNQIMQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.16e-88GRAS family protein