PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G27800.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 291aa MW: 31805.8 Da PI: 9.8811

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G27800.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.9	3.6e-16	77	124	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ lv++++ G g W+t ar g++Rt+k+c++rw++yl OGLUM05G27800.1 77 KGPWTMEEDLSLVNYIAANGEGAWNTLARAAGLNRTGKSCRLRWLNYL 124 79********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MHRIIIISHL ASRRASLPRA RMLFFLYSAV YKRGRRAARC VRRRHRPYVV EPPVAMQYTV 60 EGSGGGGVQT VEAAVRKGPW TMEEDLSLVN YIAANGEGAW NTLARAAGLN RTGKSCRLRW 120 LNYLRPDVRR GNITPEEHTL IIARYLPGRT DNEIKNFWRT KIQKKHRKST DGIYATTTSE 180 SIMPAATVHQ NTVAEDQGSS SVSGRTTTAT VAVTKEYATE APPPSGMSSG SYLDQLQPGY 240 ASSIHGGQDG GAAAAAAGDV VVSDEFLAAS SDNFWALEDL WPTVQSLHGN C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	1e-56	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G27800.1