PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G24880.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 207aa MW: 21672.2 Da PI: 8.6217

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G24880.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.8	1.9e-32	128	186	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCt+++C+vkk+v+r a+d +v++tYeg Hnh+ OGLUM05G24880.1 128 LDDGYRWRKYGQKAVKNSDFPRSYYRCTHHTCNVKKQVQRLAKDRGIVVTTYEGVHNHP 186 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence
MDGLEAAAGD QQHGRLLIPQ LPAAYLASSS MAALSPAGDD WAASLILPDG GSAAAGVGED 60 DLGGGVMAAA AAESSCGGSS TVTSSGVTEA AAAAATTTRR GRGNGKKAGG GGRTPRFAFH 120 TRSENDILDD GYRWRKYGQK AVKNSDFPRS YYRCTHHTCN VKKQVQRLAK DRGIVVTTYE 180 GVHNHPCEKL MEALSPILRQ LQLLSQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64000.1	5e-55	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G24880.1