PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G24390.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 386aa    MW: 39410.3 Da    PI: 6.7726
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G24390.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.39.2e-18255289135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  OGLUM05G24390.1 255 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 289
                      99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    
MEVAAADYAG GVRVKKEAGG CGGGGDMFLV DDLLDLPCDE EEEETGLCGA YGGGGAGLGA  60
GVVGGGGDDR AAGNASADSS TVTAVDSCSN SFSGLADGDF SGGLCEPYEQ LAELEWVSTY  120
MGEETLPTED LRKLQLISGI PAAPRAPPAL AVSAVQLPAG GAGALPTEAP VPGKARSKRS  180
RVAPCSWSSR LMVLPPPPAS PPSPASAVIS PSESGTAAPA FPAKKAAKSA KKKDGPSPAP  240
APNAAAQAAA EGRRCLHCET DKTPQWRTGP MGPKTLCNAC GVRYKSGRLV PEYRPAASPT  300
FVVSKHSNSH RKVVELRRQK EMQLLHHHQQ PPPHVGAGGG GAAGGLLHVT SPLLFDGPTS  360
SAPLFAGADE FLIHNRISPD YRRQAT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-46GATA family protein