PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G23980.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ARF

Protein Properties

Length: 697aa MW: 75240.4 Da PI: 6.7162

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G23980.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.4	1.1e-22	131	244	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f+k+lt sd++++g +++p++ ae++ + + s++l+ d++g +W++++iyr++++r++lt+GW++Fv+ ++L + OGLUM05G23980.1 131 FCKTLTASDTSTHGGFSVPRRAAEDCfpplvihlkeklvtfndyKTVR-PSQELIAVDLHGTQWKFRHIYRGQPRRHLLTTGWSSFVNRKKLVS 223 99****************************8888888887653332.5579************************************* PP T-EEEEEE-SSSEE..EEEEE-S CS B3 77 gDfvvFkldgrsefelvvkvfrk 99 gD v+F + ++++l+++v+r+ OGLUM05G23980.1 224 GDAVLFL--RGDDGQLRLGVRRA 244 *****..34888899999986 PP
2	Auxin_resp	106	4.2e-35	269	349	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+++++ksvF++++nPr+++seF+v++++++k+l++++s+GmRf++ +e+ed++er+ +G+++g+s++dp+rWp+S+W++L OGLUM05G23980.1 269 VASSLENKSVFHICFNPRSGASEFIVPYWRLLKSLNHPFSIGMRFRVCYESEDANERS-AGLISGISEVDPIRWPGSRWKCL 349 578899*************************************************9.9*******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence
MGIDLNTVEE EAEEGAAAAV CGELWHACAG PGVALPRRGS ALVYLPQAHL AAGGGEVPPA 60 GAVAVPPHVA CRVVGVELRA DAATDEVYAR LALVAEGEML QQNFREGGGE DGAGEMEGCD 120 AEKKPRMPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL VIHLKEKLVT FNDYKTVRPS 180 QELIAVDLHG TQWKFRHIYR GQPRRHLLTT GWSSFVNRKK LVSGDAVLFL RGDDGQLRLG 240 VRRAVQLRNE ALFEPVNSSD SKLRILSSVA SSLENKSVFH ICFNPRSGAS EFIVPYWRLL 300 KSLNHPFSIG MRFRVCYESE DANERSAGLI SGISEVDPIR WPGSRWKCLL VRWDDSTDSS 360 HQNRVSPWEI ERVGGSVSVT HSLSSGSKRT KLHFPQGSLD TPFLNGNGHP DSMGTENFHR 420 VLQGQEFRGS RSHGVVCSES PGVPNFQSPD NRRFSADMRG YMMPASGPPQ RNTEFTYQPI 480 GFSESLGFPE VLQGQEMSQV DPLFRGATFG ARTQNDRVVS ANSVHRSAAQ SGLLASTLGH 540 PISQFTLSSS KVSSPSSVLM FNQATAPNHE TVGGTNNKGM HVSQFASQEM LSETVTWPGT 600 QLQTPSEITS NQFALARIPA APSGAESGSP KRDAGRSSCR LFGFSLTGNM LGEDGEGLED 660 GAIEAGCENP PVLELFGHSH STPGALHALC AAAPLGM

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence

MGIDLNTVEE EAEEGAAAAV CGELWHACAG PGVALPRRGS ALVYLPQAHL AAGGGEVPPA  60
GAVAVPPHVA CRVVGVELRA DAATDEVYAR LALVAEGEML QQNFREGGGE DGAGEMEGCD  120
AEKKPRMPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL VIHLKEKLVT FNDYKTVRPS  180
QELIAVDLHG TQWKFRHIYR GQPRRHLLTT GWSSFVNRKK LVSGDAVLFL RGDDGQLRLG  240
VRRAVQLRNE ALFEPVNSSD SKLRILSSVA SSLENKSVFH ICFNPRSGAS EFIVPYWRLL  300
KSLNHPFSIG MRFRVCYESE DANERSAGLI SGISEVDPIR WPGSRWKCLL VRWDDSTDSS  360
HQNRVSPWEI ERVGGSVSVT HSLSSGSKRT KLHFPQGSLD TPFLNGNGHP DSMGTENFHR  420
VLQGQEFRGS RSHGVVCSES PGVPNFQSPD NRRFSADMRG YMMPASGPPQ RNTEFTYQPI  480
GFSESLGFPE VLQGQEMSQV DPLFRGATFG ARTQNDRVVS ANSVHRSAAQ SGLLASTLGH  540
PISQFTLSSS KVSSPSSVLM FNQATAPNHE TVGGTNNKGM HVSQFASQEM LSETVTWPGT  600
QLQTPSEITS NQFALARIPA APSGAESGSP KRDAGRSSCR LFGFSLTGNM LGEDGEGLED  660
GAIEAGCENP PVLELFGHSH STPGALHALC AAAPLGM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-138	ARF family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G23980.1