PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G23050.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 323aa    MW: 34030.5 Da    PI: 6.3367
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G23050.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.47.9e-062122491254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  OGLUM05G23050.1 212 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 249
                      677888999*******998.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MADEHEWWNS PCSARTGDDE AACSTADADE SAVGSTPMSF GHGGQPASLS DAAASSSSSS  60
FLLAGQHMDY WTQDFMGGRA AAAATASFDT LLQLQLQGGD AASPRLLLGD HAAAPPRHLV  120
VPGAPYGGGG GDDTAAPPRG LSPTPYEAAD NLQQQQSFPG GHHVVSNTDR LHDHHQDAGS  180
PSPATRSSPG SPAAAKKPRI EAPSPMPTFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH  240
EAIEYIKFLH DQVASLSSPY LRCGRPVQLQ HQQGSHKVNG NCEGKQLDLR SRGLCLVPVA  300
STYTVASETA TEFWHPTFGG TFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.15e-49bHLH family protein