PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G22570.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YC

Protein Properties

Length: 290aa MW: 32244.9 Da PI: 4.8932

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G22570.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	62.5	8.6e-20	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P rikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +tl s +++++ + +++dfl d+v + OGLUM05G22570.1 6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVKTLSSSHLKQCIHSYNVYDFLRDVVSK 86 5789**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCNRT YDITVQRGVK 60 TLSSSHLKQC IHSYNVYDFL RDVVSKVPDM GTSDAGVDDK LGKRRKTAED DSEEESKRTR 120 NEAASQTSTG RGRGRGRGRG RRGGRVSERE IISTYEKFEE NHEFPPGQFS KPSQLKVDVS 180 VDGTDAIETK EATPLSNARA SLRNIDLNIE LTDYDDEGSA PLEVQPPAPA AGVVTTSSGP 240 LVSEVNEEAK TKDFLGWQLP ELTKMAMDPV QFALSSNHRL EEDEDYDNEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	140	RGRGRGRGRG
2	131	141	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-55	NF-YC family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G22570.1