PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G08540.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 307aa    MW: 34316.4 Da    PI: 7.1752
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G08540.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.14.9e-20146207359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS..STTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae..dpkvveitYegeHnhe 59 
                      Dg++WrKYGqK++++s++ rsYYrCt++   +C+++k v++ ++  ++ + +++Y g+H+++
  OGLUM05G08540.1 146 DGHQWRKYGQKNINNSNHQRSYYRCTYKheqNCKATKTVQQLDSagETIMYTVVYYGQHTCK 207
                      9**************************9999*********9766115567899*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MKNKGSSCRY LPHSSAPCAT DGARCFRCDH RPAIDEIVRE QSLVTQLRAV VLPALETKAD  60
DGRAEIVAQL FGSILDCSRK VISALNSRYV GESPPDGDEI VDKRRAKRKN SEGKKGDEVK  120
TKPHEHKRSR RYTNSTSQIT AVPHYDGHQW RKYGQKNINN SNHQRSYYRC TYKHEQNCKA  180
TKTVQQLDSA GETIMYTVVY YGQHTCKTNM SNAPLHVVET STPQSISTTC CSDDLGDYSQ  240
KMENMHTPEL AEVCSDELGS YHAIIGAEHS ALGLEDEHMH KLLDTFACGA LDLDSLEIDA  300
IVRSGFC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-20WRKY family protein