PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G01320.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 285aa    MW: 29736.5 Da    PI: 8.2328
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G01320.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.3e-202685357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     +R+++t+eql  Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  OGLUM05G01320.1 26 TRWCPTPEQLMMLEEMYRGgLRTPNAAQIQQITAHLstygRIEGKNVFYWFQNHKARDRQ 85
                     8*****************99*************************************996 PP
2Wus_type_Homeobox118.72.6e-382486264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++tRW+PtpeQ+++Lee+y+ GlrtPn+++iq+ita+L++yG+ie+kNVfyWFQN+kaR+rqk
    OGLUM05G01320.1 24 STTRWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQNHKARDRQK 86
                       579***********************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MAPAVQQQQS GGGGGSTGAA AVGSTTRWCP TPEQLMMLEE MYRGGLRTPN AAQIQQITAH  60
LSTYGRIEGK NVFYWFQNHK ARDRQKLRRR LCISHHLLSC AHYYHHHLAA AAAAVPPPQL  120
LPPLHPSSSS SCGGGLTDHA NSLLSPTSAT TPTSAAAAAA AAAYTTSYYY PFTAAAAPPP  180
PRTSPAASPL FHYNQGGGGV VLPAAEAIGR SSSSSDYSLG KLVDNFGVAL EEAFPAQPQQ  240
PATTMAMTAV VDTTAVAAAA GGFCRPLKTL DLFPGGLKEE QHDVV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-38WOX family protein