PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G27700.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 491aa    MW: 53055.6 Da    PI: 6.1623
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G27700.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.9e-12142198155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  OGLUM04G27700.1 142 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 198
                      57*******************5444.2455536655.779999**************98 PP
2AP252.21.5e-16241292155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+fgt+eeAa+a++ a+ k++g
  OGLUM04G27700.1 241 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTEEEAAEAYDIAAIKFRG 292
                      57****************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    
MDMDTSHHYP WLNFSLAHHC EMEEERGAAA ELAAIAGAAP PPKLEDFLGG GCNGGSSGGA  60
CPPVQTTAPT AAELYESELK FLAAGFQLSG AAGAAPPVPA LLPAAALEQT DETKQLALTP  120
QAAVAPPPEQ KKAVDSFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQGGYD  180
KEEKAARAYD LAALKYWGPS TTTNFPVAEY EKELEEMKHM TRQEFVASLR RKSSGFSRGA  240
SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTEEEAA EAYDIAAIKF RGLNAVTNFE  300
IGRYNVESII SSNLPIGSMA GNRSTKAGLE LAPSSSADAI AATEANHTGV APPSTLAFTA  360
LPMKYDQADY LSYLALQHHQ QGNLQGLGFG LYSSGVNLDF ANANGNGAMS NCYTNVSLHE  420
QQQQHQHQHQ QEQQQDQQDD QSQSSNNSCG SIPFATPIAF SGSYESSMTA AGTFGYYPNV  480
AAFQTPIFGM E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-124AP2 family protein