PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G25460.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 339aa    MW: 36777.2 Da    PI: 8.8948
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G25460.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1553.3e-48111791128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpk.........................kvkaeekewyfFsk 63 
                      lppGfrFhP deelvv+yL +k++g        +    ++ +vd++k+ePw+Lp+                         +++ + +ewyfFs 
  OGLUM04G25460.2  11 LPPGFRFHPMDEELVVDYLYHKLSGGGgggageFYGGVAMVDVDLNKCEPWELPAyflhnliifparararaagrrrradAARVGATEWYFFSL 104
                      79**********************9997776543332359**************6699**********9999998887664445888******* PP

              NAM  64 rdkkyatgkrknratksgyWkatgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +d+kyatg+r+nrat+sgyWkatgkd++++++          +ge+vg++ktLvfy+grap+g+kt+Wvmhe+r+
  OGLUM04G25460.2 105 HDRKYATGQRTNRATRSGYWKATGKDRAIVTRrraaageavaGGEVVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 179
                      *******************************977777777776777***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MSLISMMEAN LPPGFRFHPM DEELVVDYLY HKLSGGGGGG AGEFYGGVAM VDVDLNKCEP  60
WELPAYFLHN LIIFPARARA RAAGRRRRAD AARVGATEWY FFSLHDRKYA TGQRTNRATR  120
SGYWKATGKD RAIVTRRRAA AGEAVAGGEV VGMRKTLVFY QGRAPRGSKT EWVMHEFRVD  180
GHAVADHPSS STSSSSSNLL KEDWVLCRVF YKSRTANPRP VVSGEAAVSL SGELSLPPPP  240
PLPVAPAVVD GYTGGGYYEQ DSSAGYHHHH HRPPTSAALP FKDLTDFRDL LSNMVQGGGG  300
GAAAAAAAKS EGFHLGWSEE ESSGYVQQSA MASQAWNPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.11e-58NAC family protein