PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G12977.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 279aa MW: 31945.8 Da PI: 8.6857 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.7 | 1.3e-50 | 18 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhP+d+elv++yL +++ ++ + v+ +vd++k+ePwd+p++++ + kewyf+s++d+kyatg r+nrat++gyWkatgkd+++ + +g AT3G12977.1 18 LPPGFRFHPRDDELVCDYLMRRTVRSLYQP-VVLIDVDLNKCEPWDIPQTARVGGKEWYFYSQKDRKYATGYRTNRATATGYWKATGKDRAIQR-NGG 113 79*****************99977777555.5899*************9889999*************************************99.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 lvg++ktLvfy+gr+pkg+ktdWvmhe+rl AT3G12977.1 114 LVGMRKTLVFYRGRSPKGRKTDWVMHEFRL 143 ****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-59 | 10 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.516 | 18 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-25 | 19 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MEETEKNKGS ISMVEANLPP GFRFHPRDDE LVCDYLMRRT VRSLYQPVVL IDVDLNKCEP 60 WDIPQTARVG GKEWYFYSQK DRKYATGYRT NRATATGYWK ATGKDRAIQR NGGLVGMRKT 120 LVFYRGRSPK GRKTDWVMHE FRLQGKLLHH SPNSLEEEWV LCRVFHKNSN GADIDDITRS 180 CSDATASAFM DSYINFDHHH IINQHVPCFS NNLSHNQTNQ SGLISKNSSP LFNASPDQMI 240 LRTLLSQLTK KVEESQSRGD GSSESQLTDI GIPSHAWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-50 | 14 | 169 | 11 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT3G12977 | |||||
AtGenExpress | AT3G12977 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G12977.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G12977 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026645 | 0.0 | AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001030683.2 | 0.0 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | ||||
Swissprot | Q84TE6 | 1e-130 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | Q9LSI1 | 0.0 | Q9LSI1_ARATH; NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | ||||
STRING | AT3G12977.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3619 | 28 | 59 | Representative plant | OGRP17 | 15 | 800 |
Link Out ? help Back to Top | |
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Phytozome | AT3G12977.1 |
Entrez Gene | 3768816 |
iHOP | AT3G12977 |
wikigenes | AT3G12977 |