PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G24100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 277aa MW: 32238 Da PI: 7.4606 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 81.8 | 9.6e-26 | 21 | 106 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrg....klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W qe+++Li+ar eme+++ ++ +++k+lWe+vs+++rerg++r+++qCk+kw+nl +ryk ++++ ++ ++cp+fd+l+ OGLUM04G24100.1 21 QWGAQETRELIAARGEMERESAAAaaarRSAKTLWEAVSARLRERGYRRTAEQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFDELH 106 7********************975223369*************************************99999974....678******98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence |
MEPGCGEGGG GGGGRDERVP QWGAQETREL IAARGEMERE SAAAAAARRS AKTLWEAVSA 60 RLRERGYRRT AEQCKCKWKN LVNRYKGKET SDPENGRQCP FFDELHAVFT ERARTMQQQL 120 LEPESGPSVK KKLKRPSGDL SSEDSDDEED GGGDSGDEKP IRSRKRKTAD KRQQSQRMAE 180 KSRTSISSIH ELLQDFLVQQ QRMDIQWHEM MERRSQERIV FEQEWRQSMQ KLEQERLMLE 240 HTWMEREEQR RMREEARAEK RDALLTTLLN KVLQEDL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 168 | SRKRKT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 4e-27 | Trihelix family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM04G24100.1 |