PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G20600.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 317aa    MW: 33023.6 Da    PI: 4.7654
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G20600.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.5e-20151201255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f+tae+Aa a+++a+ +++g
  OGLUM04G20600.1 151 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFDTAEDAALAYDRAAYRMRG 201
                      8********.***********9987..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MARSVLRNHP EASVLDTIRQ HLLEEPRGGG GGEAAEASFG SLVADMWSDS LPFRDDDADD  60
MVVFGAMRDA FSCGWLPDGV FAEVKLEPLL SPDSSSYDGS SCCFGFADVS EPVTPSDAAS  120
GAAEAAAAAA AATAEHGKEE EAAAAVARGK HYRGVRQRPW GKFAAEIRDP AKNGARVWLG  180
TFDTAEDAAL AYDRAAYRMR GSRALLNFPL RIGSEIAAAA AAAAAAAAGD KRPSPEPATS  240
ESSFSSSSSC TTTTTSSSTS SSGSPKRRKR GEAAAASMSM PLVPPPSQLN WPVQAWYPAA  300
APVEQVAITP RVEQLVI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-32ERF family protein