PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G20150.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 254aa    MW: 26966 Da    PI: 4.6418
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G20150.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.9e-06443538
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                      C+ +  + ++ fC  ++  lC+ C    H+       H+
  OGLUM04G20150.2  4 QCDVCAAEAASVFCCADEAALCDACDRRVHSAnklagkHR 43
                     7**************************9996566777776 PP
2zf-B_box25.52.8e-085992235
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35
                     +++ C+ ++ek   lfC++++  lC++C ++ H 
  OGLUM04G20150.2 59 KPPLCDICQEKTGFLFCKEDRAILCRECDVAVHT 92
                     6899*******9*******************994 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MKVQCDVCAA EAASVFCCAD EAALCDACDR RVHSANKLAG KHRRFSLLQP LASSSSAQKP  60
PLCDICQEKT GFLFCKEDRA ILCRECDVAV HTTSELTRRH GRFLLTGVRL SSAPMDSPAP  120
EEEEEEEAGE DYSCSPSSVA GTAAGSASDG SSISEYLTKT LPGWHVEDFL VDEATAAAAA  180
ASSSSDGLFQ GGLLAQIGGV PDGYAAWAGR EQLQSGVAVA ADERASRERW VPQMNAEWGA  240
GSKRPRASPP CLYW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.18e-33DBB family protein