PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G19330.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 466aa    MW: 49804.3 Da    PI: 8.7147
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G19330.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-19214264256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  OGLUM04G19330.1 214 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 264
                      59******9.**********955...5**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    
MDAPSGESGG GGGGGGGRRW KGKGVTPIQP RRQLGTVLED SSAALLRPLK KIGRSPDRLL  60
RSASSLSTSS SAPPSPRSSS ASDAPVRVIS SSPSSPSPPS ARHIFPFAYE ASTTTVGGSP  120
RLHPLSWQQS SMSQPASPQQ QQQQPLQHQQ MISFGASPPC STTQFVVPEN AQQQQMLLRY  180
WSEALNLSPR GGPGGVPPWL YQQLLRVPPP PQKLYRGVRQ RHWGKWVAEI RLPRNRTRLW  240
LGTFDTAEDA AMAYDREAFK LRGENARLNF PDRFLGKGRA GGSGRTSVSS SAAAAASCSS  300
SSPSPPETPD DANTQQQAPQ QREQRDTAGV SMEKKQPQPP APTSRQEGCS GGDAAAPYPA  360
EMLHAPAACG GMWVAPDESW FSTWGPGSSF WDDYDMDSAR GLFLHPRFTG DETSMDHSGT  420
QATVPAVAAT AAGMSMPCDD VPVTSSSSDL PPQGTPQTPT FMWKED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-35ERF family protein