PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G15620.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 605aa MW: 62656.7 Da PI: 4.7837

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G15620.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	58.2	1.6e-18	506	538	2	34
--SS-EEEEEEE--TT-SS-EEEEEE-STT--- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpv 34 +Dgy+WrKYGqK+vk se+prsYY+Ct+a+C OGLUM04G15620.1 506 EDGYSWRKYGQKQVKHSEYPRSYYKCTHASCAG 538 8******************************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence
MTTTTATLDP PPPPLLIAGS LLDDDRDVGS AASSSPRWLP RARGSTIGSP PHRGGEGRGG 60 EATMRRKGNS SSPDDDDDCR NDDDYRDDDV GATTDGGGDV AALLPMAMTT ATTTAPMPVE 120 AAADGGGELS SAGEGGQRRV NLLPAKILSV YENHLFSPLL AVERLSAWKD GFGPEDEWII 180 EKLAVIAARR SSFVSEESLC SFPAAALVSL AIAHLGEMEG DIAMEEWKDS NHRGADYLMT 240 MPMQNFLADA FPPPELLEGE GGFEKHGLSV AVGSPPPPED GCSPLPLTPQ FGQKFGSGGG 300 GGGGGSLADR RARGGFSNVA RISVPYNQPA ADVSSAGAPS PYVTIPPGLS PTTLLESPVF 360 FSNAMGQASP TTGKLHMLGG ADDSNPIRFE SPPIEEGSGA FSFKPLNLAS SHYAAAEKTK 420 SLPNNQHQSL PISVKTEATS IQTAQDEAAA NQLMQPQFNG GKLSRAAPDN GGDGEGQPAE 480 GDAKVDSSSG AAAVAVVAAA AAAVAEDGYS WRKYGQKQVK HSEYPRSYYK CTHASCAGLK 540 YPMLAPPSVH SLLRHRQGGG MEAVVVPKAE VKQEAMPPAA AVAGAGRGAA VYQQAMSRVS 600 LGNQL

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence

MTTTTATLDP PPPPLLIAGS LLDDDRDVGS AASSSPRWLP RARGSTIGSP PHRGGEGRGG  60
EATMRRKGNS SSPDDDDDCR NDDDYRDDDV GATTDGGGDV AALLPMAMTT ATTTAPMPVE  120
AAADGGGELS SAGEGGQRRV NLLPAKILSV YENHLFSPLL AVERLSAWKD GFGPEDEWII  180
EKLAVIAARR SSFVSEESLC SFPAAALVSL AIAHLGEMEG DIAMEEWKDS NHRGADYLMT  240
MPMQNFLADA FPPPELLEGE GGFEKHGLSV AVGSPPPPED GCSPLPLTPQ FGQKFGSGGG  300
GGGGGSLADR RARGGFSNVA RISVPYNQPA ADVSSAGAPS PYVTIPPGLS PTTLLESPVF  360
FSNAMGQASP TTGKLHMLGG ADDSNPIRFE SPPIEEGSGA FSFKPLNLAS SHYAAAEKTK  420
SLPNNQHQSL PISVKTEATS IQTAQDEAAA NQLMQPQFNG GKLSRAAPDN GGDGEGQPAE  480
GDAKVDSSSG AAAVAVVAAA AAAVAEDGYS WRKYGQKQVK HSEYPRSYYK CTHASCAGLK  540
YPMLAPPSVH SLLRHRQGGG MEAVVVPKAE VKQEAMPPAA AVAGAGRGAA VYQQAMSRVS  600
LGNQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	3e-21	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G15620.1