PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G10090.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 70aa    MW: 7905.23 Da    PI: 10.1329
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G10090.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.62.4e-161161250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE..-TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif..sstgklyeys 50
                     rie+  +r + f kR++g+ KKAeEL vLCda v  +++  s +++l+ ++
  OGLUM04G10090.1 11 RIEDRVRRGICFRKRLAGLEKKAEELAVLCDAHVGFVVLscSDDDRLHHFA 61
                     8*********************************87776226788888886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKAEELAVLC DAHVGFVVLS CSDDDRLHHF  60
AAPATYALSP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.14e-14MIKC_MADS family protein