PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G09460.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 807aa MW: 89956.4 Da PI: 9.5397

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G09460.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.5	2.6e-07	619	660	2	40
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++W eE ell +a++++++g +W+ +++ +g+gR+ +++ OGLUM04G09460.1 619 KPWGREEIELLRKAIQKYPKGtsrRWEVVSEFIGTGRSVEEI 660 68***********************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence
MYRLSSPPAR VVAKPNTAEE PHHPRSPKMP PAQIPRGISP LSSPTLAAPK LPTPPRHLLL 60 LPSAGGAHPR LPLPSPLPLP RDSWTAGDPS PPHHLTRRAT TSRAGARRLD DEQDEQAGGR 120 RQPANQAAGR EILGEEEQLL LFDRGRSPLI PSARIDQAIS VQEIIDGAPL YVSSNCLPIK 180 ACKYEPAGHS FHAAALKLLG LGEQEDTETD DRSVSSDDKS QDFSAASDTF SSKGKKKSGS 240 QQQDHYALLG LGHLRFLATE DQIRKSYRDM ALKHHPDKQA SLILAEATEE AKQAKKDEIE 300 SHFKAIQEAY EVLIDPTKRR IFDSTDEFDD DIPTDCAPQD FYKVFGPAFM RNGRWSVNQT 360 IPSLGDDATP VEEVDKFYNF WYNFKSWREF PHADEYDLEQ AESREHKRWM ERQNAKLQEK 420 AKKVEYARVR TLVDNAYKKD PRIQRRKEEE KAEKQRRKEA KYLAKKMQEE EAAKAAEEER 480 KRKEEEAKRA AEAALNQKKL KEKEKKLLRK EKTRLRNLVA PVVAESHFSL SEDDVETACS 540 SLDMERLKKL CDSMENKDTT EKARLLRGAL SKEGSSGTSN EGKKIQANGV DGSKAKSTSS 600 GEKVTQGNTL SNYEKKEEKP WGREEIELLR KAIQKYPKGT SRRWEVVSEF IGTGRSVEEI 660 LKATKTVLLQ KPDSTKAFDS FLEKRKPAPS IASPLSVRTE TVGLPTEKAS GDASSKAPAQ 720 PASSKTSDEK APAPAPVSNG TPSGTADPEA WSEAQVLALV QALKAFPKDA SQRWERVAAA 780 VPGKTMVQCK KKVAEMQKNF RSKKGAE

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence

MYRLSSPPAR VVAKPNTAEE PHHPRSPKMP PAQIPRGISP LSSPTLAAPK LPTPPRHLLL  60
LPSAGGAHPR LPLPSPLPLP RDSWTAGDPS PPHHLTRRAT TSRAGARRLD DEQDEQAGGR  120
RQPANQAAGR EILGEEEQLL LFDRGRSPLI PSARIDQAIS VQEIIDGAPL YVSSNCLPIK  180
ACKYEPAGHS FHAAALKLLG LGEQEDTETD DRSVSSDDKS QDFSAASDTF SSKGKKKSGS  240
QQQDHYALLG LGHLRFLATE DQIRKSYRDM ALKHHPDKQA SLILAEATEE AKQAKKDEIE  300
SHFKAIQEAY EVLIDPTKRR IFDSTDEFDD DIPTDCAPQD FYKVFGPAFM RNGRWSVNQT  360
IPSLGDDATP VEEVDKFYNF WYNFKSWREF PHADEYDLEQ AESREHKRWM ERQNAKLQEK  420
AKKVEYARVR TLVDNAYKKD PRIQRRKEEE KAEKQRRKEA KYLAKKMQEE EAAKAAEEER  480
KRKEEEAKRA AEAALNQKKL KEKEKKLLRK EKTRLRNLVA PVVAESHFSL SEDDVETACS  540
SLDMERLKKL CDSMENKDTT EKARLLRGAL SKEGSSGTSN EGKKIQANGV DGSKAKSTSS  600
GEKVTQGNTL SNYEKKEEKP WGREEIELLR KAIQKYPKGT SRRWEVVSEF IGTGRSVEEI  660
LKATKTVLLQ KPDSTKAFDS FLEKRKPAPS IASPLSVRTE TVGLPTEKAS GDASSKAPAQ  720
PASSKTSDEK APAPAPVSNG TPSGTADPEA WSEAQVLALV QALKAFPKDA SQRWERVAAA  780
VPGKTMVQCK KKVAEMQKNF RSKKGAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	480	501	RKRKEEEAKRAAEAALNQKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	0.0	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G09460.1