PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G08780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 209aa MW: 23657.5 Da PI: 10.1186 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 21.3 | 3.5e-07 | 14 | 38 | 6 | 30 |
HHHHHHHHHHHHHHHHHHHHHHHHH CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvL 30 + +r vtf kR++g+ KK +E +L OGLUM04G08780.1 14 DVKRRVTFMKRLKGLTKKVSEFATL 38 679******************9998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence |
MAHKKVKLQR IIIDVKRRVT FMKRLKGLTK KVSEFATLFL MVYGEVEVQA TMVWPSVWEA 60 TRVLEHFNAM PHLDRYKKMT DLERILNEQV DKLKEQLHKV GHDANESETK LLLIEAINGR 120 RPSLEGLTIE QITSLGWMAN AHLKIVNDRL KKLHEEGLIP ASVSLSGTEV PTQREGWLMD 180 VARGIGSMGY NRFRGSSGSG TAGYNGDMA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 9e-17 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM04G08780.1 |