PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G08330.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 390aa    MW: 43373.9 Da    PI: 5.8532
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G08330.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like48.22.4e-15173222455
          G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      l Wtp L ++F++a++ L G++ A Pk+i+++m+v+ +   +++ HLQk+Rl
  OGLUM04G08330.1 173 LMWTPHLQKKFLHALQIL-GKD-ASPKNIKKIMGVDNIDCRQIAAHLQKHRL 222
                      78****************.665.****************************8 PP
2Response_reg52.33.1e-18151232108
                      EEESSSHHHHHHHHHHHH.HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   2 livdDeplvrellrqale.kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      +++d+++  ++    +l+ + ++ +v++++++ +al+ l+++   +Dl+l D+ m +m+G+++lk  re ++++++i+++++ ++ ++++++k 
  OGLUM04G08330.1  15 MVIDEDKCHADSTSYMLSaELNF-SVTVFTSPIKALDFLQNHAegVDLVLADVHMEEMNGFDFLKVARELHKSIQVIMMSTETTMYTMKRCVKH 107
                      899***************9999*.******************999************************************************* PP

                      TESEEEESS--HHHHH CS
     Response_reg  93 GakdflsKpfdpeelv 108
                      Ga+  + Kp d   + 
  OGLUM04G08330.1 108 GAQFLVNKPLDAGTIK 123
                      *********9987765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    
MAQKEGLPAG RLSAMVIDED KCHADSTSYM LSAELNFSVT VFTSPIKALD FLQNHAEGVD  60
LVLADVHMEE MNGFDFLKVA RELHKSIQVI MMSTETTMYT MKRCVKHGAQ FLVNKPLDAG  120
TIKNLWQYVD LKVLRMEKIK DLLQGIGDES TCANETNSLA ENPKNDTKKK YYLMWTPHLQ  180
KKFLHALQIL GKDASPKNIK KIMGVDNIDC RQIAAHLQKH RLRLTKDLKK ASFTTDTSKD  240
ESNSRIGPAE SHHVCRNASI LQPHSNTQPT ETTMQILSED AEYDDVYAAM RRALQYGIVF  300
DESKHSSDPS GDEDEQVVVG GDQDGCTNEA NDIDSSGDHH QVAAVVTKPC NANASQEIIN  360
KMTNSDGMQA TKGSKAAVFR LVDYSESDSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.16e-24ARR-B family protein