PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G33290.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 451aa MW: 48537.1 Da PI: 10.3275

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G33290.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.8	3.4e-31	385	443	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYeg+Hnh+ OGLUM03G33290.1 385 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 443 69***********************988**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MDGADHPGAH FGGPARVLDS TSTAAALPCL YQPRGRERER EREGQPLPLL VVVVSTGGGL 60 SPGSSEGMEE ANREAVQSCH RVLTLLSSPH SQLVPNKDLA AATGEAVAKF CSVASRLNNG 120 NGLQGHARVR KIKKPLPIFD SNLFLESPAL AAATAAKTPN PSPITSLQLF PRYHQMEGSS 180 SKDPVRIPAQ FPKRLLLDNP AVDSDGPSRG PPLQLIQPVS VAPPAGTPHP ALPSAHLHFI 240 QQHQSYQRFQ LMQQMKMQSE MIKRSGLGEQ GGSNGGGKGV NLKFDSSNCT ASSSRSFLSS 300 LSMEGSIASL DGSRSSRPFQ LVSGSQTSST PELGLMQRRR CTGREDGSGR CTTGSRCHCA 360 KKRKLRIRRS IKVPAISNKV ADIPADEFSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK 420 HVERCVDDPS MLIVTYEGDH NHNRVLAAQP A

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MDGADHPGAH FGGPARVLDS TSTAAALPCL YQPRGRERER EREGQPLPLL VVVVSTGGGL  60
SPGSSEGMEE ANREAVQSCH RVLTLLSSPH SQLVPNKDLA AATGEAVAKF CSVASRLNNG  120
NGLQGHARVR KIKKPLPIFD SNLFLESPAL AAATAAKTPN PSPITSLQLF PRYHQMEGSS  180
SKDPVRIPAQ FPKRLLLDNP AVDSDGPSRG PPLQLIQPVS VAPPAGTPHP ALPSAHLHFI  240
QQHQSYQRFQ LMQQMKMQSE MIKRSGLGEQ GGSNGGGKGV NLKFDSSNCT ASSSRSFLSS  300
LSMEGSIASL DGSRSSRPFQ LVSGSQTSST PELGLMQRRR CTGREDGSGR CTTGSRCHCA  360
KKRKLRIRRS IKVPAISNKV ADIPADEFSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK  420
HVERCVDDPS MLIVTYEGDH NHNRVLAAQP A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	2e-63	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G33290.1