PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G32460.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 379aa    MW: 41990.2 Da    PI: 5.8424
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G32460.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-10182230355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  OGLUM03G32460.1 182 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 230
                      58**************************....899*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    
MRTGTRGSCD LAVREQGKIG VSEQLEMYSG QQSDQCPGPN SGKEFLEVNW DSVALHQKMG  60
YNSGAFGFQA YPMVLEDREG LYRSPNGTFC QNIQLSDDHS SGAKRRKGID DHIALLNPSA  120
SSRIQNVGDQ QTEVSSQQER ISMEEDNQKS CSKMQSKEDS SDGDGTKEDY VHVRAKRGQA  180
TNSHSLAERL RRKKISERMK LLQDLVPGCS KITGKAVMLD EIINYVQSLQ RQVEFLSMKL  240
ATVNPELSFD IEQILSKQMM LSQDRHLAFY GVDSGSSALV AHFNQGIMQP EMLCNVSNPA  300
DVLQGTTIQD ISTVNQIPAM WEGLQNIPHL NYNPGGAMAE GSTNNSGIYD PKFCQKLCLV  360
LVIYQTHGNV PPFCTLQVP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-52bHLH family protein