PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G31540.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 333aa    MW: 35001.5 Da    PI: 7.0127
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G31540.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1585.2e-49542161136
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 
                      aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+++k+ai e++++  +++s c e++sss s++ ++++     
  OGLUM03G31540.1  54 AAARKDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIMSD--DASSVCeEDGSSSLSVDGKQQQhsnpa 145
                      589**************************************************************..666668867777777664444445678 PP

              TCP  89 .......................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                                             k +++aa++k++++ a+++  ++kesrakar+rarert+ek+r+++++
  OGLUM03G31540.1 146 dhgggagdhkgaahghsdgkkpaKPRRAAANPKPPRRLANAHPVPDKESRAKARERARERTKEKNRMRWVT 216
                      8889999999999*********77777777**************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MHPFMDLELE PHAQQLAAAE EEDGAGGNEY GGGQGVNAGV PFGVDGAAAA AAAAAARKDR  60
HSKISTAGGM RDRRMRLSLD VARKFFALQD MLGFDKASKT VQWLLNMSKA AIREIMSDDA  120
SSVCEEDGSS SLSVDGKQQQ HSNPADHGGG AGDHKGAAHG HSDGKKPAKP RRAAANPKPP  180
RRLANAHPVP DKESRAKARE RARERTKEKN RMRWVTLASA ISVEAATAAA AAAAAGEDMS  240
PTSPGNNLNH SSSTNLVSTE LEDGSSSTRH NGVGVSGGRM QEISAASEAS DVIMAFANGG  300
AYGDSGSYYL QQQHQQDQWE LGGVVFANSR HYC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-23TCP family protein