PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G30940.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 749aa MW: 79354.3 Da PI: 6.9565

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G30940.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.7e-07	311	331	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg OGLUM03G30940.1 311 PCPDFRK-GVCRRGDMCEYAHG 331 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence
MNGTPISASA AAGVDGVGAA VALAAATKKS AAAAAAVAEM AKTLTVDTDD AFAGLLELAA 60 DDDAEGLRRA LERAPPAAAD EAGLWYGRRK VLEHRTPLMV AATYGSLAVL RLLLSLPSVD 120 VNRRCGSDGT TALHCAASGG SPSCVEAVKL LLAAGADADA TDASGYRPAD VISVPPKMFD 180 AKIALQDLLG CPKAGHGVLR VVTRAANSMS SPVSSPTAED ARSPSASVMM TTKFADLPRV 240 VTSEKKEYPV DPSLPDIKNS IYASDEFRMY SFKIRPCSRA YSHDWTECPF VHPGENARRR 300 DPRKYHYSCV PCPDFRKGVC RRGDMCEYAH GVFECWLHPA QYRTRLCKDG TSCNRRVCFF 360 AHTTDELRPL YVSTGSAVPS PRASATATME MAAAMGLMPG SPSSVSAVMS PFTPPMSPSG 420 NGMPPSLGWQ QPNVPTLHLP GSSLQSSRLR TSLSARDMPA DDYSLMQDID SQLINDLCYS 480 RIGSSTGNHT SRTKSLNPSN LDDLFSAEMV SSPRYSNADQ GGMFSPSHKA AFLNQFQQQQ 540 QALLSPINTV FSPKSVDNQQ LPSHSSLLQA SLGISSPGRM SPRCVESGSP MNSHLAAALA 600 QREKQQQTMR SLSSRDLGPS AARASGVVGS PLSSSWSKWG SPSGTPDWGV NGEELGKLRR 660 SSSFELRSGG DDPDLSWVHT LVKESPPEKQ VTTAESINSV GPSPLMPPSV SNGEGSSLNA 720 PLDGHDQAAV IGALLEQMQL DQHIGSLAT

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence

MNGTPISASA AAGVDGVGAA VALAAATKKS AAAAAAVAEM AKTLTVDTDD AFAGLLELAA  60
DDDAEGLRRA LERAPPAAAD EAGLWYGRRK VLEHRTPLMV AATYGSLAVL RLLLSLPSVD  120
VNRRCGSDGT TALHCAASGG SPSCVEAVKL LLAAGADADA TDASGYRPAD VISVPPKMFD  180
AKIALQDLLG CPKAGHGVLR VVTRAANSMS SPVSSPTAED ARSPSASVMM TTKFADLPRV  240
VTSEKKEYPV DPSLPDIKNS IYASDEFRMY SFKIRPCSRA YSHDWTECPF VHPGENARRR  300
DPRKYHYSCV PCPDFRKGVC RRGDMCEYAH GVFECWLHPA QYRTRLCKDG TSCNRRVCFF  360
AHTTDELRPL YVSTGSAVPS PRASATATME MAAAMGLMPG SPSSVSAVMS PFTPPMSPSG  420
NGMPPSLGWQ QPNVPTLHLP GSSLQSSRLR TSLSARDMPA DDYSLMQDID SQLINDLCYS  480
RIGSSTGNHT SRTKSLNPSN LDDLFSAEMV SSPRYSNADQ GGMFSPSHKA AFLNQFQQQQ  540
QALLSPINTV FSPKSVDNQQ LPSHSSLLQA SLGISSPGRM SPRCVESGSP MNSHLAAALA  600
QREKQQQTMR SLSSRDLGPS AARASGVVGS PLSSSWSKWG SPSGTPDWGV NGEELGKLRR  660
SSSFELRSGG DDPDLSWVHT LVKESPPEKQ VTTAESINSV GPSPLMPPSV SNGEGSSLNA  720
PLDGHDQAAV IGALLEQMQL DQHIGSLAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G30940.1