PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G28230.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YA

Protein Properties

Length: 390aa MW: 40721.6 Da PI: 8.0122

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G28230.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	95.8	4.8e-30	205	261	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVNaKQy++Il+RR +Rak+++e++l k+rkpylheSRh+hA+rR+RgsgGrF OGLUM03G28230.1 205 DAPIYVNAKQYEGILRRRRARAKAQRENRL-VKGRKPYLHESRHRHAMRRARGSGGRF 261 68**************************.************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MAIAVEEGLH LPPQAEILLD AIGGVAVACV LEPPCFSFSL SLSSARETTT TVAAAMLSFK 60 QSHEGFGHVA AAGAGPQQQQ QPWWAGSQLL YGEASPEEAA LRDGGQFQVV PGGRAALDPA 120 APEPEKTAVP SMPKRGGGGG APEVLKFSVF SGNLEPGDTG EKNREHSATI AMQSLLPEYN 180 GHFELGLGQS MSGGRMLLPL NAPADAPIYV NAKQYEGILR RRRARAKAQR ENRLVKGRKP 240 YLHESRHRHA MRRARGSGGR FLNTKKEATA AGCGGSSKTP LASLVSPADV VHRPGSRGGG 300 AGRASSLSGS DVSSPGGGMY DHHRHDDADA ADHYNSIDHH LRTPFFTPLP IIMDSGGGGG 360 DHASHSAAAV AAPFRWATAA GDGCCELLKA

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MAIAVEEGLH LPPQAEILLD AIGGVAVACV LEPPCFSFSL SLSSARETTT TVAAAMLSFK  60
QSHEGFGHVA AAGAGPQQQQ QPWWAGSQLL YGEASPEEAA LRDGGQFQVV PGGRAALDPA  120
APEPEKTAVP SMPKRGGGGG APEVLKFSVF SGNLEPGDTG EKNREHSATI AMQSLLPEYN  180
GHFELGLGQS MSGGRMLLPL NAPADAPIYV NAKQYEGILR RRRARAKAQR ENRLVKGRKP  240
YLHESRHRHA MRRARGSGGR FLNTKKEATA AGCGGSSKTP LASLVSPADV VHRPGSRGGG  300
AGRASSLSGS DVSSPGGGMY DHHRHDDADA ADHYNSIDHH LRTPFFTPLP IIMDSGGGGG  360
DHASHSAAAV AAPFRWATAA GDGCCELLKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	246	255	RHRHAMRRAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14020.1	4e-22	NF-YA family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G28230.1