PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G21930.5
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 317aa    MW: 34778.8 Da    PI: 9.621
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G21930.5genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.52e-32163219158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep++VNaKQy++Il+RRq+Rakle+++k   k+rkpylheSRh+hA++R+RgsgGrF
  OGLUM03G21930.5 163 EEPIFVNAKQYNAILRRRQTRAKLEAQNKA-VKGRKPYLHESRHRHAMKRARGSGGRF 219
                      69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MIMLLQEMEN HPVQCMAKTN YDFLARNNYP MKQLVQRNSD GDSSPTKSGQ SHQEASAVSD  60
SSLNGQHTSP QSVFVPSDIN NNDSCGERDH GTKSVLSLGN TEAAFPPSKF DYNQPFACVS  120
YPYGTDPYYG GVLTGYTSHA FVHPQITGAA NSRMPLPVDP SVEEPIFVNA KQYNAILRRR  180
QTRAKLEAQN KAVKGRKPYL HESRHRHAMK RARGSGGRFL TKKELLEQQQ QQQQQKPPPA  240
SAQSPTGRAR TSGGAVVLGK NLCPENSTSC SPSTPTGSEI SSISFGGGML AHQEHISFAS  300
ADRHPTMNQN HRVPVMR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204213RHRHAMKRAR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.18e-37NF-YA family protein