PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G16780.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 357aa    MW: 36364.6 Da    PI: 4.9404
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G16780.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.38.8e-25133193259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg+ WrKYGqK++++s++prsYYrCt++   gC ++++ +r++ dp+  +itY geH+++
  OGLUM03G16780.1 133 EDGHVWRKYGQKDIQNSPYPRSYYRCTHKldqGCGARRQTQRCEADPSNYDITYYGEHTCR 193
                      8***************************9999**************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    
MPFSSEGGVP AERVAAAVND LVEVRDGLVR LRGFLPPPPQ AEQSSSRPPC AAELMDATMS  60
KLMSAMATLG GSGDIAGEVD AAGRWTSVAE SADPMVVRRE GESSAGRTRR RRGGGSRSGR  120
GRSSNKRVAA TLEDGHVWRK YGQKDIQNSP YPRSYYRCTH KLDQGCGARR QTQRCEADPS  180
NYDITYYGEH TCRDPSTIIP TAIANAAGAA SDGPNNNIIS FATGGVVVAN SSRLAREGTT  240
TSAATQLSSS WGTSGGGGGG DDVFSSSGER FMQWDELAAA VGHVSSVGVT SSTVGSAPAA  300
ENDGGNGDTA AGGGGGGGGD GGGAGSFPSS PSAGSLGFVV GPLGSIEDVD DFFPFDP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-22WRKY family protein