PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G16500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 484aa MW: 52664.6 Da PI: 9.4596 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.2 | 8.8e-11 | 99 | 122 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++++rtG C++G +CkF+H+ OGLUM03G16500.1 99 EPDCSYYMRTGLCRFGMTCKFNHP 122 789********************8 PP | |||||||
2 | zf-CCCH | 38.7 | 1.7e-12 | 144 | 168 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ OGLUM03G16500.1 144 QPECQYYLKTGTCKFGATCKFHHPR 168 799********************96 PP | |||||||
3 | zf-CCCH | 36.5 | 8.4e-12 | 190 | 214 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ OGLUM03G16500.1 190 EKECAYYLRTGQCKFGSTCKFHHPQ 214 679********************97 PP | |||||||
4 | zf-CCCH | 39.4 | 1e-12 | 351 | 376 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ OGLUM03G16500.1 351 DQPECQFYMKTGDCKFGAVCKFHHPK 376 689*********************96 PP | |||||||
5 | zf-CCCH | 38.3 | 2.3e-12 | 396 | 422 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++r+G+Ck+G++CkF H++ OGLUM03G16500.1 396 PGEPICTFYSRYGICKFGPNCKFDHPM 422 5799*********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence |
MTWRPLVILS GARPGPSPSA VKAPVDWVGW RGRAAVKKSG EGRRGTKTTG CPNGDASFLS 60 FPFLPPSSAS ASSSSALTPA RMNLGEAMEA GPYPERIGEP DCSYYMRTGL CRFGMTCKFN 120 HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA TCKFHHPREK AAMATRVQLN 180 ALGYPLRPNE KECAYYLRTG QCKFGSTCKF HHPQPSNTMV AVRGSVYSPG QSVTSPSQHT 240 YPGAVTNWPL SRSASFIASP RWPGHSSYAQ VIVPPGLVQV PGWNPYAAQI GSSSSDDQQR 300 TAGGAQYYTG SRHSETPNMG DQGMFSSYQA GSVPLGLYTV QRESIFPERP DQPECQFYMK 360 TGDCKFGAVC KFHHPKERII PTPNCVLSSL GLPLRPGEPI CTFYSRYGIC KFGPNCKFDH 420 PMGTVMYGLA TSPTGDVSAR RMLAPVPAHS EVSPDNVSGR SRRITHSDSQ QIPSGERGTE 480 REAS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-152 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM03G16500.1 |