PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G12690.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 377aa    MW: 40782.3 Da    PI: 9.5365
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G12690.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.47.1e-05233276654
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++  ++R +++ +++  L++l+ +      +K + a++L +A  +I++L
  OGLUM03G12690.1 233 KATCKKRSQKLGDRITALQQLVSPY-----GKTDTASVLHEAAACIRQL 276
                      56669******************99.....9*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    
MLTDELERKR YRTLILVADT FLANDLRQFP SAKLKASLYT STLANIFILM LKGSTGIQLL  60
SLFSGYMKDD VSSAVETQLA ESCRLESGVE TCRLLVSSVA VKCEASNSPS TTVGFDRMIA  120
ADYDLFHHMS FSPSLQNLQS PTFFTTRSSE SYLGESSIYG GGARPALAQF SYSQPIAATS  180
AAHLVRWTAA GEPMTGDGGF RSSKRLKTAT TATTQPPRHG VKCHAKPRNQ TTKATCKKRS  240
QKLGDRITAL QQLVSPYGKT DTASVLHEAA ACIRQLHQQI QILTAPYPGT SSSSASSQQQ  300
VVFSVLESCS HVMSFFTAIA TVLWLQDAGG GGGTATELRR RGLCVAALSP AVVSLAAEGG  360
RRRTDVEDQK RIWFSNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.14e-17bHLH family protein