PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G19500.1
Common NameBHLH113, EN61, MLD14.24
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 270aa    MW: 28787 Da    PI: 5.0095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G19500.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.7e-051541941055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + R +r+ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  AT3G19500.1 154 KVRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 194
                  678889999*********999.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.31E-4142198No hitNo description
SuperFamilySSF474599.81E-12143205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.973144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-7152200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009052anatomyflower pedicel
PO:0001185developmental stageplant embryo globular stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGDTAEDQDD RAMMEAEGVT SFSELLMFSD GVLSSSSDHQ PEGNVGDGGE DSLGFVFSGK  60
TGSRMLCFSG GYQNDDESLF LEPSVPTSGV SDLDPSCIKI DCRNSNDACT VDKSTKSSTK  120
KRTGTGNGQE SDQNRKPGKK GKRNQEKSSV GIAKVRKERL GERIAALQQL VSPYGKTDAA  180
SVLHEAMGYI KFLQDQIQVL CSPYLINHSL DGGVVTGDVM AAMKAKDLRS RGLCLVPVSS  240
TVHVENSNGA DFWSPATMGH TTSPSLPQGF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.384000.0seed
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible258018_at0.0
Expression AtlasAT3G19500-
AtGenExpressAT3G19500-
ATTED-IIAT3G19500-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G19500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G19500
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0845200.0AY084520.1 Arabidopsis thaliana clone 110428 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_566639.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9LT670.0BH113_ARATH; Transcription factor bHLH113
TrEMBLA0A178VI500.0A0A178VI50_ARATH; Uncharacterized protein
STRINGAT3G19500.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74022234
Representative plantOGRP13421337
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Heim MA, et al.
    The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
    Mol. Biol. Evol., 2003. 20(5): p. 735-47
    [PMID:12679534]
  3. Toledo-Ortiz G,Huq E,Quail PH
    The Arabidopsis basic/helix-loop-helix transcription factor family.
    Plant Cell, 2003. 15(8): p. 1749-70
    [PMID:12897250]
  4. Bailey PC, et al.
    Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
    Plant Cell, 2003. 15(11): p. 2497-502
    [PMID:14600211]
  5. Nawy T, et al.
    Transcriptional profile of the Arabidopsis root quiescent center.
    Plant Cell, 2005. 17(7): p. 1908-25
    [PMID:15937229]
  6. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]