PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G09560.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 820aa MW: 88472.4 Da PI: 5.2443

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G09560.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35	2.5e-11	647	695	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k Ka++L + ++Y++sLq OGLUM03G09560.2 647 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 695 58************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 820 aa Download sequence
MKLRLRSMDQ RGGAGAAAAE THRVQLPDTA TLSDVKAFLA TKLSAAQPVP AESVRLTLNR 60 SEELLTPDPS ATLPALGLAS GDLLYFTLSP LPSPSPPPQP QPQAQPLPRN PNPDVPSIAG 120 AAGPTKSPVE SGSSSSMPQA LCTNPGLPVA SDPHHPPPDV VMAEAFAAIK SKSSLVVGAT 180 KREMENVGGA DGTVICRLVV ALHAALLDAG FLYANPVGSC LQLPQNWASG SFVPVSMKYT 240 LPELVEALPA VEEGMVAVLN YSLMGNFMMV YGHVPGATSG VRRLCLELPE LAPLLYLDSD 300 EVSTAEEREI HELWRVLKDE MCLPLMISLC QLNNLSLPPC LMALPGDVKA KVLEFVPGVD 360 LARVQCTCKE LRDLAADDNL WKKKCEMEFN TQDTCGCMMC KCIYSDQRKD IVLADKYTRG 420 NYMQKPVTQP GRWLIILVFH SLLCQYITIG LSLLWYHLVD LVQDAPAAGI HFDCIIPLPI 480 NPYQLPPSAG ACCSTTQASA SAKDGGNVLQ IPKPLEMYSP PCSAAASSQG HCFAVGANQL 540 ASLDLAMDFD EPILFPVHNA SLQEGIQFYN PTGDTQLSRN MSIDKCLKGS KRKGSGEGSS 600 SLHSQEETGE MPQRELSMEH AGEKAGDADA SREEYVHVRA KRGQATNSHS LAERFRREKI 660 NERMKLLQDL VPGCNKITGK AMMLDEIINY VQSLQRQVEF LSMKLSTISP ELNSDLDLQD 720 ILCSQDARSA FLGCSPQLSN AHPNLYRAAQ QCLSPPGLYG SVCVPNPADV HLARAAHLAS 780 FPQQRGLIWD EELRNIAPAG FASDAAGTSS LENSDSMKVE

Sequence ? help Back to Top

Protein Sequence Length: 820 aa Download sequence

MKLRLRSMDQ RGGAGAAAAE THRVQLPDTA TLSDVKAFLA TKLSAAQPVP AESVRLTLNR  60
SEELLTPDPS ATLPALGLAS GDLLYFTLSP LPSPSPPPQP QPQAQPLPRN PNPDVPSIAG  120
AAGPTKSPVE SGSSSSMPQA LCTNPGLPVA SDPHHPPPDV VMAEAFAAIK SKSSLVVGAT  180
KREMENVGGA DGTVICRLVV ALHAALLDAG FLYANPVGSC LQLPQNWASG SFVPVSMKYT  240
LPELVEALPA VEEGMVAVLN YSLMGNFMMV YGHVPGATSG VRRLCLELPE LAPLLYLDSD  300
EVSTAEEREI HELWRVLKDE MCLPLMISLC QLNNLSLPPC LMALPGDVKA KVLEFVPGVD  360
LARVQCTCKE LRDLAADDNL WKKKCEMEFN TQDTCGCMMC KCIYSDQRKD IVLADKYTRG  420
NYMQKPVTQP GRWLIILVFH SLLCQYITIG LSLLWYHLVD LVQDAPAAGI HFDCIIPLPI  480
NPYQLPPSAG ACCSTTQASA SAKDGGNVLQ IPKPLEMYSP PCSAAASSQG HCFAVGANQL  540
ASLDLAMDFD EPILFPVHNA SLQEGIQFYN PTGDTQLSRN MSIDKCLKGS KRKGSGEGSS  600
SLHSQEETGE MPQRELSMEH AGEKAGDADA SREEYVHVRA KRGQATNSHS LAERFRREKI  660
NERMKLLQDL VPGCNKITGK AMMLDEIINY VQSLQRQVEF LSMKLSTISP ELNSDLDLQD  720
ILCSQDARSA FLGCSPQLSN AHPNLYRAAQ QCLSPPGLYG SVCVPNPADV HLARAAHLAS  780
FPQQRGLIWD EELRNIAPAG FASDAAGTSS LENSDSMKVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	2e-45	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G09560.2