PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G08230.4
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 271aa    MW: 30816.6 Da    PI: 8.6146
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G08230.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.52.8e-19231091199
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++  l lp kfa+e g  + ++  l++  e  r W+vk+  +  sg ++l++GW+eF++a++L++g f+vF++dg   f  +v+vf++
  OGLUM03G08230.4  23 SSKTKLKLPYKFARELGDRELREARLRVAGEGRRPWDVKVFDDDVSGDVYLGRGWQEFARAHDLRDGHFLVFRYDGAAAF--TVTVFDE 109
                      455669**********999999999***************77999999**************************998888..9999986 PP
2B347.92.4e-151722441487
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      + l +p +f e+h++  +e  +++l   +g+ W+v+l++  r +++r+ ++ GW +F+ +ngL +gD++ F++ ++
  OGLUM03G08230.4 172 QYLNVPMEFQEAHEYARRE--KVVL-RMRGEAWTVRLKHsrRERGQRTAFRYGWHRFCVDNGLAVGDTCFFRVLRE 244
                      56889********988554..4555.5599*******9876667777*************************6654 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MEDQMANVRL TDFEFFRIIL PGSSKTKLKL PYKFARELGD RELREARLRV AGEGRRPWDV  60
KVFDDDVSGD VYLGRGWQEF ARAHDLRDGH FLVFRYDGAA AFTVTVFDET MCRRDYRRHH  120
DAAGTGSSSS SDSSDAAAAA AATAAAEGVG DVALSQFAVT LRQCNLEDKQ AQYLNVPMEF  180
QEAHEYARRE KVVLRMRGEA WTVRLKHSRR ERGQRTAFRY GWHRFCVDNG LAVGDTCFFR  240
VLREGDLRRR GAADDHVLKV AVRKADGTTL E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.15e-20B3 family protein