PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G07680.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 340aa    MW: 36444.4 Da    PI: 5.65
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G07680.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.5e-112643041055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  OGLUM03G07680.1 264 RKRRERINERLKILQNLIPNG-----TKVDISTMLEEAVHYVKFLQ 304
                      9******************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MESSEASWHS FDPSVAMEDS EAMAQLLGVQ YFGNDQEQQQ PAAAVPPAMY WPAHDAADQY  60
YGSAPYCYMQ QQQHYGCYDG GAMVAGGDFF VPEEQLVADP SFMVDLNLEF EDQHGGDAGG  120
AGSSAAAAAA ATKMTPACKR KVEDHKDESC TDNVARKKAR STAATVVQKK GNKNAQSKKA  180
QKGACSRSSN QKESNGGGDG GNVQSSSTNY LSDDDSLSLE MTSCSNVSSA SKKSSLSSPA  240
TGHGGAKARA GRGAATDPQS LYARKRRERI NERLKILQNL IPNGTKVDIS TMLEEAVHYV  300
KFLQLQIKLL SSDDMWMFAP IAYNGVNVGL DLKISPPQQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-45bHLH family protein