PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G06100.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 336aa    MW: 36072.6 Da    PI: 4.3277
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G06100.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.8e-17101150255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    +  r++lg+f  ae Aa a++ a+++++g
  OGLUM03G06100.1 101 QYRGVRRRP-WGKWAAEIRDPV----KgIRVWLGTFTNAEAAALAYDDAARAIRG 150
                      69*******.**********75....44***********************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MCGGAILAEL IPSEPAARRV TAGHVWPGGA NKAKKKGARA DDFEAAFRDF DNDSDDEEMM  60
VEEAEEEEAT SEHKPFVFRA KKARKAAAAA AASSRRRKPA QYRGVRRRPW GKWAAEIRDP  120
VKGIRVWLGT FTNAEAAALA YDDAARAIRG DRAKLNFPSA TTPDTRKRGR ATAAAAPAVK  180
ATPVINLVEE EDEEEEVAAA MASIKYEPET SESSESNALP DFSWQGMSAS DEFAVAAAAL  240
DSDDDLAKKR PRTEPEDITT TTDSGSGDDT DALFDALLFA DQYNYFNGGA YESLDSLFSA  300
DAVQTTAAAA AADQGMGLWS FDDGCCLVDV EASLSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196108RRKPAQYRGVRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-16ERF family protein