PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G06060.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 334aa    MW: 35633.4 Da    PI: 5.76
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G06060.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-19110159255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++G+r+++ +g+W+AeIrdp     + +r++lg+f t+eeAa+a++  +++l+g
  OGLUM03G06060.1 110 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTPEEAARAYDVEARRLRG 159
                      69*******.**********72....35*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MCGGAILAEF IPAPSRAAAA TKRVTASHLW PAGSKNAAGG KSKSKRQQRS FADVDDFEAA  60
FEQFDDDSDF DDAEEEDEGH FVFASKSRVV AGHDGRAAAR AASKKKRGRH FRGIRQRPWG  120
KWAAEIRDPH KGTRVWLGTF NTPEEAARAY DVEARRLRGS KAKVNFPATP AAARPRRGNT  180
RATAAPPPAT APAAAPPRGL KREFSPPAET ALPFFTNGFV DLTTAAAPPP AMMMTSSFTD  240
SVATSESGGS PAKKARSDDV DSSEGSVGGG SDTLGFTDEL EFDPFMLFQL PYSDGYESID  300
SLFAAGDANS ANTDMNAGVN LWSFDDFPID GALF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-27ERF family protein