PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G06050.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 295aa MW: 33100.2 Da PI: 8.9982 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.3e-19 | 115 | 165 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr+++ +gr++AeIrdp++ +r++lg++g+aeeAa a+++ +++++g OGLUM03G06050.4 115 SKYRGVRRRP-SGRFAAEIRDPKK---GRRVWLGTYGSAEEAAMAYDREARRIRG 165 89********.7*********954...4************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence |
MGDVSPGERR ARRAMCGGAI LADFTPARVP RRLTAAELLP VTPTPPAAER RTTRKRKSDV 60 DFEAEFELFE DDDDDDEFEL SDDGDEISSD VSSSSRPRRR VAAAAAGRRK ASKKSKYRGV 120 RRRPSGRFAA EIRDPKKGRR VWLGTYGSAE EAAMAYDREA RRIRGKGARL NFPRDGDGSP 180 RRSNDRPCWT IDLNLPAAAV SDQEALSAAK CKIKQCPRDE QMASATPELM EEDASSSRNM 240 VPLSMALQLQ YAAMIAECDR EMEEIAAVER DLERRRRQVF ERRGHLVRQA SLLLD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 58 | TRKRKS |
2 | 108 | 124 | RRKASKKSKYRGVRRRP |
3 | 109 | 125 | RRKASKKSKYRGVRRRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 7e-25 | ERF family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM03G06050.4 |