PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G06050.3
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 314aa    MW: 35007.4 Da    PI: 9.2961
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G06050.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-19134184155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GVr+++ +gr++AeIrdp++    +r++lg++g+aeeAa a+++ +++++g
  OGLUM03G06050.3 134 SKYRGVRRRP-SGRFAAEIRDPKK---GRRVWLGTYGSAEEAAMAYDREARRIRG 184
                      89********.7*********954...4************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MGDVSPGERR ARRAMCGGAI LADFTPARVP RRLTAAELLP VTPTPPAAER RTTRKRKSDV  60
DFEAEFELFE DDDDDDEFEL SDDGDESLAV SCVSSPKPKA VPSFSFSSDV SSSSRPRRRV  120
AAAAAGRRKA SKKSKYRGVR RRPSGRFAAE IRDPKKGRRV WLGTYGSAEE AAMAYDREAR  180
RIRGKGARLN FPRDGDGSPR RSNDRPCWTI DLNLPAAAVS DQEALSAAKC KIKQCPRDEQ  240
MASATPELME EDASSSRNMV PLSMALQLQY AAMIAECDRE MEEIAAVERD LERRRRQVFE  300
RRGHLVRQAS LLLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15358TRKRKS
2127143RRKASKKSKYRGVRRRP
3128144RRKASKKSKYRGVRRRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-22ERF family protein