PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G06050.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 315aa    MW: 35476.8 Da    PI: 8.5936
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G06050.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-19115165155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GVr+++ +gr++AeIrdp++    +r++lg++g+aeeAa a+++ +++++g
  OGLUM03G06050.1 115 SKYRGVRRRP-SGRFAAEIRDPKK---GRRVWLGTYGSAEEAAMAYDREARRIRG 165
                      89********.7*********954...4************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MHDVSPGERR ARRAMCGGAI LADFTPARVP RRLTAAELLP VTPTPPAAER RTTRKRKSDV  60
DFEAEFELFE DDDDDDEFEL SDDGDEISSD VSSSSRPRRR VAAAAAGRRK ASKKSKYRGV  120
RRRPSGRFAA EIRDPKKGRR VWLGTYGSAE EAAMAYDREA RRIRGKGARL NFPRDGDGSP  180
RRSNDRPCWT IDLNLPAAAV SGDDDDDAMA KLNLCWRRNL AHQEALSAAK CKIKQCPRDE  240
QMASATPELM EEDASSSRNM VPLSMALQLQ YAAMIAECDR EMEEIAAVER DLERRRRQVF  300
ERRGHLVRQA SLLLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15358TRKRKS
2108124RRKASKKSKYRGVRRRP
3109125RRKASKKSKYRGVRRRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-24ERF family protein