PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G05250.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 91aa    MW: 9981.2 Da    PI: 8.5174
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G05250.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.3e-0818581554
                     HHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
              HLH 15 riNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                     +iN+ +++L+ llP++s + ++ + s +  L++++ YIksL
  OGLUM03G05250.1 18 EINELISKLQALLPESSrSRSASRSSASKLLKETCSYIKSL 58
                     7**************6647777779999************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    
MSSRRGGGGG GGRITDEEIN ELISKLQALL PESSRSRSAS RSSASKLLKE TCSYIKSLHR  60
EVDDLSDRLS ELMSTMDNNS PQAEIIRSLL R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1513RGGGGGGGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-23bHLH family protein